a) Make a theoretical calculation of how many ATP molecules can be formed from the breakdown of a molecule of Acetyl- CoA into carbon dioxide and water. The prerequisite is that the entire proton gradient across the mitochondrial inner membrane can be used for ATP production and that the ATP synthase has 6 c-subunits.
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Proteins
We generally tend to think of proteins only from a dietary lens, as a component of what we eat. However, they are among the most important and abundant organic macromolecules in the human body, with diverse structures and functions. Every cell contains thousands and thousands of proteins, each with specific functions. Some help in the formation of cellular membrane or walls, some help the cell to move, others act as messages or signals and flow seamlessly from one cell to another, carrying information.
Protein Expression
The method by which living organisms synthesize proteins and further modify and regulate them is called protein expression. Protein expression plays a significant role in several types of research and is highly utilized in molecular biology, biochemistry, and protein research laboratories.
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- (A) What is the free energy yield associated with the transport of a proton from the mitochondrial intermembrane space (IMS) to the mitochondrial matrix, assuming that the pH of the IMS is 1.4 units lower than the pH of the matrix? (Hint: Calculate AGO' for the reaction H"IMS > H matris using the relationship AG° = RTInKeg and remembering that pH = -log1o[H*]. Assume that T = 310K (37°C), and R = 8.315x10-3 kJ mol-1 K-1. Show your work and include correct units!)1 a) What is meant by the ATP currency exchange ratio? Why does the oxidation of mitochondrial FADH2 generate one less ATP than oxidation of mitochondrial NADH? b) If 12 H+ are moved across the inner mitochondrial membrane by NADH oxidation, and each ATP synthesized requires 3 H+ to move through ATP synthase, why are only 3 ATP molecules produced by oxidation of each NADH?21) Compute the moles of FADH2, NADH, GTP generated and NADPH consumed in the dissimilation of one mole each of the octadecanoic acid and A3.5-ocatadienoic acid thioesters shown below to CO2 in the mitochondrial matrix space. Enter the product yields of electron carriers and GTP and the total yield of ATP after processing mitochondrial electron-transport chain in the tables provided below COAS COAS Product Total Converslon Yield ATP Product Total Conversion Yleld ATP FADH2 1.5 FADH2 1.5 2.5 NADH 2.5 NADH NADPH -2.5 NADPH -2.5 GTP GTP Total ATP Total ATP 8.
- 1. Name and draw diagrammatically the series of mitochondrial electron transfer catalysts, starting with the oxidation of NADH and succinate and ending with the reduction of O2. 2. Indicate the sites and stoichiometry (per 2e) at which protons are translocated from the matrix to the intermembrane space. 3. Indicate which complexes are inhibited by: amytal, antimycin A, azide (N3 ), cyanide (CN), carbon monoxide (CO), and rotenone. 4. Describe the effects of (1) oligomycin and (2) uncouplers of oxidative phosphorylation, e.g., dinitrophenol (DNP), carbonyl cyanide-p- trifluoromethoxyphenylhydrazone (FCCP), on respiration and ATP synthesis when added to a suspension of mitochondria with excess malate, ADP, and inorganic phosphate (Pi).Although the outer mitochondrial membrane is permeable to all small molecules, the inner mitochondrial membrane is essentially impermeable in the absence of specific transport proteins. Consider this information answer: Present two types of benefits derived from separating the reactions of glycolysis in the cytosol from those that occur during the citric acid cycle in the mitochondrion.ATP is synthesized from ADP, P, and a proton on the matrix side of the in- ner mitochondrial membrane. We will refer to the matrix side as the "inside" of the inner mitochondrial membrane (IMM). (a) H* transport from the outside of the IMM into the matrix drives this process. The pH inside the matrix is 8.2, and the outside is more acidic by 0.8 pH units. Assuming the IMM membrane potential is 168 mV (inside negative), calculate AG for the transport of 1 mol of H* across the IMM into the matrix at 37 °C: Houtside) Hinside) (b) Assume three mol H* must be translocated to synthesize one mol ATP by coupling of the following reactions: ADP + P, + Hinskde) ATP + H,O(ATP synthesis) 3Hinside)(proton transport) 3Houtside)
- Calcium is an important regulator of the citric acid cycle. Calcium is transported across the mitochondrial inner membrane by a Ca²- 2+ uniporter that is driven by the negative potential inside the matrix. Part A Assuming a membrane potential across the inner membrane of 172 mV (inside negative), calculate the ratio of the [Ca2+] in the matrix to that in the cytoplasm ([Ca2+]m/[Ca²+]c) that would exist at equilibrium (i.e., AG = 0). Express your answer using two significant figures. [Ca2+]m [Ca2+] = ΤΟ ΑΣΦ Submit Request Answer Part B ? Cytoplasmic [Ca2+] is on the order of 10-7 M in a healthy cell. Based on your answer in Part A, calculate the [Ca2+] that would exist in the matrix at equilibrium. Express your answer to two significant figures and include the appropriate units. ☐ μÅ ? Value UnitsIn beta oxidation of fatty acids in mitochondria, ubiquinone (via FAD / FADH2) from the respiratory chain acts as an oxidizing agent in one oxidation step and NAD + as an oxidizing agent in the other oxidation step. Discuss the exchange of ATP per oxygen molecule consumed in the breakdown of fatty acids into acetyl-COAI in relation to the exchange of ATP perroxygen molecule consumed if only NADH is the electron source for the respiratory chain.What is the major route for protons moving from the inter membrane space back into the mitochondrial matrix during oxidative phosphorylation? 1. Protons carried across the membrane by a molecule of dinitrophenol 2. Protons are transported along with ADP by the ATP/ADP translocase.3. Protons enter the half channel in subunit a facing the inter membrane space and exit via the half channel facing the mitochondrial matrix. Choose 1 correct answer explain? Give typing answer with explanation and conclusion
- Calculate the ATP yield for the complete oxidation of the ketone body 3-hydroxybutryate to 4 CO2 in the mitochondrial matrix. Use P:O ratios of 2.5 for NADH and 1.5 for QH2. Draw the chemical reaction and the movement of electrons (including the enolate intermediate) necessary for the spontaneous decarboxylation of acetoacetate to acetone and CO2. (Hint: review the mechanism of step 4 in glycolysis and step 3 in the citric acid cycle). Why is acetoacetate undergoing spontaneous decarboxylation while 3-hydroxybutyrate does not?When the antibiotic X is added to actively respiring mitochondria, several things happen: the yield of ATP decreases, the rate of O2 consumption increases, heat is released, and the pH gradient across the inner mitochondrial membrane increases. Does X act as an uncoupler or an inhibitor of oxidative phosphorylation? Explain the experimental observations in terms of the antibiotic’s ability to transfer K+ ions across the inner mitochondrial membrane.Nicotinamide nucleotide transhydrogenase (NNT) in the inner mitochondrialmembrane catalyzes the reaction NADH + NADP+ → NAD+ + NADPH to generate the NADPH needed for certain reactions that help destroy reactive oxygen species. (a) Explain why the NNT reaction cannot be driven primarily by the diff erence in substrate reduction potentials (Δℰ). (b) In fact, the NNT reaction is driven by proton translocation across the membrane (from outside to inside). How does operation of the transhydrogenase aff ect the effi ciency of oxidative phosphorylation?