Given the figure below. Which structure is predominant at pH = 8.0?(Note: The amino acid structures on the topmost portion are labeled as A,B, C and D from left to right) *çOOH pK1H3Nt CHCH2CH2CH2ČH2NH3*pooH2N-CHCH2CH2GH2CH2NH2fooH2N-CHCH2çoopK2pk3CH2CH2NH3*NH3*14 1pK2plpk31210pH 64pK120.511.522.53Equivalents of OH

Amino acids are organic compounds with two functional group namely carboxyl and amino group. At…

Answered: Given the figure below. Which structure…

Biochemistry

9th Edition

ISBN:9781319114671

Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Chapter1: Biochemistry: An Evolving Science

Section: Chapter Questions

Problem 1P

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Place each charge form of alanine under the pH condition where it would be the predominant form. The pK₁ values for the carboxyl group and amino group of alanine are approximately 2.3 and 9.7, respectively. pH 11 H | H₂C-C-COO NH₂ Does not occur in significant amounts at any pH
Modify isoleucine to show the predominant forms at pH 1, 7, and 13. Isoleucine has, values of 2.4 (carboxyl group) and 9.7 (amino group). Isoleucine at pH 7 Isoleucine at pH 1 CH3 CH₂ + H₂C CH +H₂N- C H Incorrect Isoleucine at pH 13 Incorrect H₂C H₂N- CH₂ | CH₂ CH c- C H 0 ĭ Incorrect H₂C +H₂N-
a. Use three-letter amino acid abbreviations to write the representation for the tripeptide shown here. i H₂N-CH-C-N-CH-C-N-CH-C-0- CH₂ H -NH H ī CH₂ SH -CH-C-0- CH-OH CH3 b. Give the full name of the amino acid at the C-terminal end of this tripeptide. H₂N-CH-C-N-CH-C-N-CH-C-O- -CH-C-N-CH-C CH₂ c-o- CH₂ OH
Copy of The following reaction scheme shows the states of the amino acid hisitdine. Histidine has three pKa's - 2, 6 and 9.2. Which form of Histidine predominates at pH of 5? *H3N-CH-Ĉ-OH CH2 *H3N-CH-C–O- CH2 "H3N-CH-C-O- CH2 H2N-CH-C–O- CH2 +HN *HN N' -NH -NH -NH NH A C O A. A ОВ. В OC.C O D.D O E. The answer cannot be determined with information given.
The following are structural diagrams of a selection of newly discovered amino acids. OH -の-CHs NH HO C-OH NH, AN-CH CH2 CH2 OH Ho NH, C=0 a) Select 1 amino acid. Redraw it. Label the alpha carbon and circle/highlight the entire backbone of the amino acid. b) The amino acids are part of a channel protein embedded in the cell membrane. Choose 2 amino acids (from above) that you would expect to find within the interior/middle of the cell membrane. Draw the formation of the dipeptide using the 2 amino acids you selected. Identify the other products formed in the reaction.
Please clearly identify each numbered amino acid side chain, below. Your description should include the name or 3 letter code for the amino acid and the type (i.e., chemical class) of the amino acid. 1 4 OH OH CH, CH, CH2 CH2 CH, "H,N-C-C-0 "H,N-C-C-0 "H,N-C-C-0 _0-5-5-N H. H O H O HO но
A peptide has the sequence Glu-His–Trp–Ser-Gly–Leu-Arg-Pro–Gly The pK, values for the peptide's side chains, terminal amino groups, and carboxyl groups are provided in the table. Amino acid Amino pKa Carboxyl pKa Side-chain pKa glutamate 9.60 2.34 4.25 histidine 9.17 1.82 6.00 tryptophan 9.39 2.38 serine 9.15 2.21 glycine 9.60 2.34 leucine 9.60 2.36 arginine 9.04 2.17 12.48 proline 10.96 1.99 Calculate the net charge of the molecule at pH 3. net charge at pH 3:
Modify isoleucine to show the predominant forms at pH 1, 7, and 13. Isoleucine has pk, values of 2.4 (carboxyl group) and 9.7 (alaing group). Isoleucine at pl! 7 Isoleucine at pH I 대표 대, 1 - Isoleucine at pli 13 1 1 CH4. I I - CH I ## - 10 II
What is the charge on the following peptide at standard biochemical pH? S-Y-D-F-K-I-V-F-L-L +2 -1 0 0 0-2 O +1
Given the following peptide, answer following questions 1-5: CO CH2 O || CH2 O H3N-CH-C-NH- CH-c-OCH3 | 1. Is this a dipeptide or tripeptide? 2. How many amino acid components/residues are there? 3. Name these amino acids. 4. What kind of bond links these amino acids? 5. The above structure represents the major ingredient in some commercial product(s). Identify the name of this major ingredient or the commercial product(s). Given that the hemagglutininin protein in influenza virus contains a remarkably long a-helix with 53 residues, answer questions 6-7. 6. How long is this a-helix (in nm)? Show all calculations. 7. How many turns does this helix have? Show all calculations.
A 100 ml solution of 0.1 M amino acid (AA) at ph 1.0 was titrated with NaOH solution. The pH was monitored, and the results were plotted on the graph. The keypoints in the titration are designated I to VII. What is the possible identity of the amino acid? What is the isoelectric point of AA? what is the pKa corresponding to the dissociation of the alpha carboxylic group? Region/point where AA is predominantly present as a (-1) charged species? The effective buffering range for the amino acid in the acidic region? Region/point where the solution has 50:50 percent mixture of the (0) and (-1) species
Refer to following peptide structure: H&N CH3 IZ CH3- CH₂OH IZ OH ZI CH3 CH3. OH IZ OH IZ CH2 CONH2 parce 0 IZ Calculate the net charge of this peptide at pH = 12. OH CH3 What is the identity of the second residue in the peptide shown below? Enter the capitalized single letter abbreviation. 0- Estimate the pl and round to the nearest whole number. Use pKa values provided in lecture.

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Given the figure below. Which structure is predominant at pH = 8.0? %3D