Classify each of the following examples as: (1) potential energy, (2) kinetic energy, or (3) a transformation of energy DOD electron transport causes hydrogen ions (H+) to accumulate in a membrane-enclosed compartment sunlight heat ATP supplies one of its phosphates to a membrane protein, activating it so that it can transport a specific molecule glucose (a monosaccharide sugar with the chemical formula C6H1206) 1. potential energy 2. kinetic energy 3. energy transformation
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- In the rete mirabile serving the red swimming muscles oftunas, some key enzymes of catabolism show gradients ofconcentration: They are more concentrated at the cold end of therete, and less concentrated at the warm end. These variationsparallel variations that are often seen in the thermal acclimationof poikilotherms, when enzyme concentrations rise duringacclimation to cold and fall during acclimation to heat. Whatdo you think could be some of the reasons for these spatial andtemporal variations in enzyme concentration? Why not havethe highest observed enzyme concentrations everywhere at alltimes?A transmembrane protein helps catalyze the transport of solute A from the INSIDE TO the OUTSIDE of a cell. The reaction can be represented by the reaction coordinate diagram below. It is possible to conclude that the concentration of A on the outside of the cell is than its concentration on the inside AND that it is_ to expect that the protein will at some point form a continuous path between th cytosol and the extracellular environment. A inside A outside reaction coordinate O lower; reasonable O higher; unreasonable O higher; reasonable free energyWhy does growth of ETPUM in Medium # require oxygen? ' ink about this in terms of howETPUM can generate a net gain in ATP by processing polyurethane. Remember that the degradationof polyurethane by polyurethanase does not expend ATP. In order to answer this question, address eachof the following questions in your answer:a. Is there a net gain or loss of ATP during the transport of the citrate?b. Consider the ATPs that can be generated via substrate-level phosphorylation. Will glycolysis beuseful for generating any ATPs during growth on polyurethane? How many ATPs can be generatedvia TCA? Is this enough to support growth (is there a net positive in the ATP tally)?c. Now consider how else ETPUM can generate ATPs (if not by substrate- level phosphorylation). Canthis process generate a net positive in the ATP tally?d. Now explain the importance of oxygen as relates to the ATP tally.
- The standard free energy of hydrolysis of inorganic polyphosphate (polyP) is about −20 kJ/mol for each Pi released. We calculated in Worked Example 13–2 that, in a cell, it takes about 50 kJ/mol of energy to synthesize ATPfrom ADP and Pi. Is it feasible for a cell to use polyphosphate to synthesize ATP from ADP? Explain your answer.Two experiments were performed with the enzymeribonuclease. In experiment 1 the effect of increasingsubstrate concentration on reaction velocity was measured.In experiment 2 the reaction mixtures were identical tothose in experiment 1 except that 0.1 mg of an unknowncompound was added to each tube. Plot the data accordingto the Lineweaver-Burk method. Determine the effect of theunknown compound on the enzyme’s activity. (Substrateconcentration is measured in millimoles per liter. Velocity ismeasured in the change in optical density per hour.)Suppose the concentration of glucose inside a cell is 0.1 mM and the cell issuspended in a glucose solution of 0.01 mM.(a) What would be the free energy change, in kJ/mol, for the transport ofglucose from the medium into the cell? Assume T = 37 °C.(b) What would be the free energy change, in kJ/mol, for the transport ofglucose from the medium into the cell if the intracellular and extracellularconcentrations were 1 mM and 10 mM, respectively?(c) If the processes described in parts (a) and (b) were coupled toATP hydrolysis, how many moles of ATP would have to be hydrolysed,per mole of glucose transported, in order to make each process favorable? (Use the standard free energy change for ATP hydrolysis.)
- The pH values of the different compartments are shown below: matrix Intermembrane space Cytosol pH 7.8 – 8.0 pH ~ 7.0pH 7.0 – 7.4 Proton flow through ATP synthase leads to the formation of ATP, a process defined as the binding-change mechanism that was initially proposed by Boyer. Briefly explain Boyer’s binding change mechanism for the ATP synthase.Velocity, activity units/mg protein 31 5 4 3 ~ 0 5 15 20 Aspartate concentration, mM 10 - Control - With CTP With ATP 25 Figure 2: Kinetics of ATCase in the presence of ATP and CTP (based on Gerhart and Pardee, 1962). The kinetics of the ATCase reaction were examined using increasing concentrations of aspartate, in the presence and absence of CTP and ATP as shown in Figure 2. a. What information can you obtain by looking at the shapes of the curves in this figure? b. What kinetic parameter(s) change in the presence of CTP? What parameter(s) do not change? What is the significance of these observations? c. Answer question 2b for ATP.Calculate the membrane potential in the transport of Cl- from the intracellular environment to the extracellular environment. The Cl- concentration outside the cell is 98 uM, the Cl- concentration in the cytoplasm is 0.025 mM, the Gibbs free energy is -956 J/mol and the temp is 37°C. Have concentration in uM units when solving.
- Catalane in un enzyme that speeds up the decomposition ot hydrogen peroxide H0) to waler and axvgen. Students conducted two investigationa to determine the ideal conditions for the function of catalane. One wetigation compared catalase activity at diferent values of pH. The other imvestigation compared catalane activity al diferent temperatures. Enayme Activity ve pH Enzyme Aetivity vs Temperature Teate C) According to the data in the graphs, which pH and temperature combination provides the BEST conditions for catalase to tunction? Anury lag aname and explain the model that most likely accounts for cooperativity in enzymeNADH Also indicate why this is the most likely model.Which statements are true? Explain why or why not.1 Although lipid molecules are free to diffuse in theplane of the bilayer, they cannot flip-flop across the bilayerunless enzyme catalysts called phospholipid translocatorsare present in the membrane.2 Whereas all the carbohydrate in the plasma mem-brane faces outward on the external surface of the cell, allthe carbohydrate on internal membranes faces toward thecytosol.3 Although membrane domains with different pro-tein compositions are well known, there are at present noexamples of membrane domains that differ in lipid com-position.